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CLI: sort

Synopsis

Sort a TWO file.

Examples

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tomahawk sort -i 1kgp3_chr6.two -o 1kgp3_chr6_sorted.two -m 1 -c 10 -t 28

Options

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Options:
  -i FILE   input TWO file (required)
  -o FILE   output file (- for stdout; default: -)
  -m FLOAT  maximum memory usage per thread in GB (default: 0.5)
  -c INT    compression level 1-20 (default: 1)
  -t INT    number of threads (default: maximum available)