CLI: decay¶
Synopsis¶
Compute LD decay over distance.
Examples¶
1 2 3 | tomahawk decay -i 1kgp3_chr6.two -I 6:10e6-11e6 tomahawk decay -i 1kgp3_chr6.two -I 6:10e6-11e6 -w 1000000 tomahawk decay -i 1kgp3_chr6.two -I 6:10e6-11e6 -w 1000000 -m |
Options¶
1 2 3 4 5 6 | Options: -i FILE input TWO file (required) -I STRING interval string for target region -w INT window size in base bairs (default: 10Mb) -b INT number of bins each window is separated into -m output haplotypes in tab-delimited matrix form |